Ultrafast de novo assembly for long noisy reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/yvwlbl1sqqsvnsggivqpdws3m62jqmdh-miniasm-0.3.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/hsflsrvxljgzm7iqkwjvzdca2nvsd7cf-miniasm-0.3.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/x5ijplgd993ly9gi0jglpz0mv134f7zk-miniasm-0.3.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/ikgdsc5ikmf6a0946kyi0an85ggs4jdf-miniasm-0.3.drv | |
mips64el-linux | /gnu/store/dvkp71jc2a1i6rdcnjcfz4c38v9gr8d8-miniasm-0.3.drv | ||
i686-linux | /gnu/store/smch786jqwi7wcinf22zw77s6cyvmqdr-miniasm-0.3.drv | ||
i586-gnu | /gnu/store/gpjg59gx5j585844wwcngnizqdggijgh-miniasm-0.3.drv | ||
armhf-linux | /gnu/store/5ip60fba26k3zx0md11m4chyvhblajxp-miniasm-0.3.drv | ||
aarch64-linux | /gnu/store/8j4qrw7iwf428v82lmfgbkp4ly141fz5-miniasm-0.3.drv |
Linter | Message | Location |
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source-unstable-tarball Check for autogenerated tarballs | the source URI should not be an autogenerated tarball |