Aligner and other tools for short sequencing reads
This package provides bioinformatic tools to align, deduplicate, reformat, filter and normalize DNA and RNA-seq data. It includes the following tools: BBMap, a short read aligner for DNA and RNA-seq data; BBNorm, a kmer-based error-correction and normalization tool; Dedupe, a tool to simplify assemblies by removing duplicate or contained subsequences that share a target percent identity; Reformat, to convert reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s; and BBDuk, a tool to filter, trim, or mask reads with kmer matches to an artifact/contaminant file.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/vsg75sb7935p36sn1niz4i6pigxvzgg6-bbmap-35.82.drv | ||
| mips64el-linux | /gnu/store/13hi3k56d214rad044z9ysz9jnb5rrw7-bbmap-35.82.drv | ||
| i686-linux | /gnu/store/l9sqrngknv32qnqz03dfcfgkpqzs019w-bbmap-35.82.drv | ||
| armhf-linux | /gnu/store/dch06ys9vvhz4wwgy04wyi6gqsigvxc3-bbmap-35.82.drv | ||
| aarch64-linux | /gnu/store/42f3npkf23n8f2gkds196jm0cxf0ljw3-bbmap-35.82.drv |
| Linter | Message | Location |
|---|---|---|
| No lint warnings ✓ | ||