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Base (28bfc5cd081458313fa8601133386209b23deb12)

Packages found in the base revision.

NameVersion
wiggletools1.2.11More information
wfmash0.8.1More information
wfa2-lib2.3.3More information
vsearch2.9.1More information
vembrane0.13.2More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.9More information
vbz-compression1.0.1More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
trf4.09.1More information
transanno0.3.0More information
tophat2.1.1More information
tombo1.5.1More information
tetoolkit2.2.1bMore information
tbsp1.0.0-2.dc30c03More information
taxtastic0.9.2More information
tadbit1.0.1-1.5c4c1ddMore information
tabixpp1.1.2More information
sylamer18-131More information
subread2.0.3More information
stringtie2.2.0More information
stpipeline1.8.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sra-tools2.10.6More information
sortmerna4.3.4More information
snap-aligner2.0.0More information
smithwaterman0.0.0-2.2610e25More information
smithlab-cpp0.1.728a097More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.4More information
seqan3.0.3More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
seek1-1.196ed4cMore information
scvelo0.2.4More information
scregseg0.1.3More information
scallop0.10.5More information
samtools1.2More information
samtools1.14More information
samtools1.12More information
samtools1.10More information
samtools0.1.19More information
samblaster0.1.26More information
sambamba0.8.2More information
salmon1.10.1More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
r-umi4cpackage0.0.1-1.88b07d8More information
ruby-bio-kseq0.0.2More information
r-tsis0.2.0-1.2446029More information
r-tictoc1.2More information
r-spectre0.5.5-1.f6648abMore information
r-snapatac2.0More information
r-skitools0.0.0.9000-1.22d107dMore information
r-signac1.9.0-1.af41427More information
r-shinycell2.0.0-1.aecbd56More information
r-shaman2.0-2.d6944e8More information
r-seuratwrappers0.3.1-1.d28512fMore information
r-seurat-utils1.6.5-1.0b6f5b5More information
r-seqgl1.1.4More information
rseqc3.0.1More information
rsem1.3.3More information
r-scseqcomm0-0.01076e7More information
r-scopeloomr0.13.0-1.99726f5More information
r-scde1.99.2More information
r-sccustomize0.7.0-1.8414d1fMore information
r-rnaseqdtu2.0-1.5bee1e7More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psupertime0.2.6-1.73825a2More information
r-psiplot2.3.0More information
r-presto1.0.0-0.052085dMore information
r-premessa0.3.4-1.68b42bbMore information
r-pore0.24More information
r-plsdabatch0.2.3-1.4aadf3aMore information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
r-pando1.0.1More information
r-omnipathr3.5.5-1.679bb79More information
roary3.12.0More information
r-misha4.1.0More information
r-millefy0.1.9-betaMore information
r-maxprobes0.0.2-1.c2120dbMore information
r-markdownreports4.5.9-1.3ba1103More information
r-markdownhelpers0.2.0-1.793372dMore information
r-liana0.1.5-1.efb1249More information
r-kbet0.99.6-1.f35171dMore information
ritornello2.0.1More information
r-illuminahumanmethylationepicanno-ilm10b5-hg380.0.1-1.3db0691More information
r-icellnet1.0-0.b9c0548More information
r-gutils0.2.0-1.10e36c7More information
r-gtrack0.1.0-1.a694fa3More information
r-giotto1.1.2-1.3c8067cMore information
r-ggsankey0.0.99999-1.be08dd0More information
r-ggexpress0.6.6-1.82f1693More information
r-gg3d0.0.0.9000-1.ffdd837More information
r-gchain0.2.0-1.dc393e8More information
repeat-masker4.1.2-p1More information
r-dyngen1.0.5More information
r-dropbead0-2.d746c6fMore information
r-doubletfinder2.0.3-1.554097bMore information
r-doubletcollection1.1.0-1.c0d62f1More information
r-domultibarheatmap0.1.0-1.9e65afaMore information
r-disgenet2r0.99.2-1.8d8ce37More information
r-demuxmix1.1.1-1.09a7918More information
r-demultiplex21.0.0-1.e42bc83More information
r-demultiplex1.0.2-1.6e2a142More information
r-cytonorm0.0.10-1.166f9ffMore information
r-cytoexplorer1.1.0-1.0efb1ccMore information
r-cytobackbone1.0.0-1.4c1a0a3More information
r-cssam1.4-1.9ec58c9More information
r-copykat1.0.8-0.256de33More information
r-compgenomrdata0.1.0-1.24484cbMore information
r-circus0.1.7More information
r-chromvarmotifs0.2.0-1.38bed55More information
r-chromunity0.0.1-1.09fce8bMore information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
r-catch1.0-1.196ddd5More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
r-bamutils0.0.0.9000-1.639dba9More information
raxml8.2.12More information
r-ascat2.5.2More information
r-archr1.0.1-1.92ab814More information
python-vireosnp0.5.7More information
python-velocyto0.17.17More information
python-twobitreader3.1.6More information
python-taggd0.3.6More information
python-strawc0.0.2.1More information
python-slamdunk0.4.3More information
python-scrublet0.2.3More information
python-screed1.1.2More information
python-scikit-bio0.5.7More information
python-schema-salad8.2.20211116214159More information
python-scanpy1.9.1More information
python-scanorama1.7.2More information
python-pyvcf0.6.8-0.476169cMore information
python-pyspoa0.0.5More information
python-pysam0.20.0More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.5More information
python-pyfit-sne1.2.1More information
python-pyfaidx0.7.2.1More information
python-pyega33.4.1More information
python-pybigwig0.3.17More information
python-pybbi0.3.0More information
python-py2bit0.3.0More information
python-plastid0.6.0More information
python-ont-fast5-api4.0.0More information
python-mygene3.2.2More information
python-multivelo0.1.2More information
python-mgatk0.6.7More information
python-mappy2.24More information
python-loompy3.0.7More information
python-intervaltree3.1.0More information
python-ikarus0.0.2More information
python-iced0.5.8More information
python-hicmatrix16More information
python-hicexplorer3.7.2More information
python-hic2cool0.8.3More information
python-goatools1.3.1More information
python-gffutils0.10.1More information
python-genomic-regions0.0.10More information
python-genomepy0.15.0More information
python-fanc0.9.25More information
python-episcanpy0.4.0More information
python-drep3.2.0More information
python-dnaio0.6.0More information
python-dna-features-viewer3.1.1More information
python-dendropy4.5.1More information
python-deeptoolsintervals0.1.9More information
python-deeptools3.4.3More information
python-ctxcore0.1.1More information
python-cooltools0.5.1More information
python-cooler0.8.11More information
python-coolbox0.3.8More information
python-cgatcore0.6.14More information
python-bx-python0.9.0More information
python-bwapy0.1.4More information
python-biothings-client0.2.6More information
python-bbknn1.5.1More information
python-bamnostic1.1.8More information
python-arboreto0.1.6More information
pyscenic0.11.2More information
proteinortho6.0.14More information
prodigal2.6.3More information
prinseq0.20.4More information
preseq2.0.3More information
prank170427More information
porechop0.2.3-1.289d5dcMore information
plink-ng2.00a3.3More information
plink1.07More information
piranha1.2.1-1.0466d36More information
pigx-scrnaseq1.1.9More information
pigx-sars-cov-20.0.9More information
pigx-rnaseq0.1.0More information
pigx-chipseq0.1.0More information
pigx-bsseq0.1.8More information
pigx0.0.3More information
phyml3.3.20220408More information
phylip3.697More information
phast1.5More information
perl-cworld-dekker1.01More information
pardre2.2.5More information
paml4.9eMore information
orfm0.7.1More information
ngs-sdk2.10.5More information
ngshmmalign0.1.1More information
ngless1.5.0More information
newick-utils1.6-1.da121155More information
ncbi-vdb2.10.6More information
nanosv1.2.4More information
nanopolish0.14.0More information
muscle3.8.1551More information
multiqc1.14More information
multichoose1.0.3More information
mudskipper0.1.0More information
mosaik2.2.30More information
mosaicatcher0.3.1More information
minimap22.24More information
miniasm0.3More information
minced0.3.2More information
methyldackel0.6.1More information
metabat2.15More information
megahit1.2.9More information
megadepth1.1.1More information
mash2.1More information
mantis0.1-2.b6979a2More information
mafft7.475More information
maffilter1.3.1More information
macs2.2.7.1More information
louvain0.2More information
lofreq2.1.5More information
libsbml5.18.0More information
libmaus22.0.786More information
libgff2.0.0More information
libbigwig0.4.4More information
kraken22.1.2More information
khmer3.0.0a3More information
kentutils302.0.0More information
kallisto0.48.0More information
kaiju1.9.0More information
jellyfish2.3.0More information
java-picard2.3.0More information
java-picard2.10.3More information
java-picard1.113More information
java-ngs2.10.5More information
java-htsjdk2.3.0More information
java-htsjdk2.14.3More information
java-htsjdk2.10.1More information
java-forester1.005More information
java-forester0-1.86b07efMore information
java-biojava-phylo4.2.11More information
java-biojava-phylo4.0.0More information
java-biojava-core4.2.11More information
java-biojava-core4.0.0More information
java-biojava-alignment4.2.11More information
java-biojava-alignment4.0.0More information
jamm1.0.7.6More information
ivar1.4.2More information
intervaltree0.0.0-1.b90527fMore information
instrain1.5.4More information
infernal1.1.4More information
indelfixer1.1More information
imp2.15.0More information
idr2.0.3More information
htslib1.9More information
htslib1.16More information
htslib1.14More information
htslib1.12More information
htslib1.10More information
htseq2.0.2More information
htscodecs1.5.0More information
homer4.11.1More information
hmmer3.3.2More information
hisat22.2.1More information
hisat0.1.6More information
hh-suite3.3.0More information
go-github-com-biogo-store-step0.0.0-20201120204734-aad293a2328fMore information
go-github-com-biogo-store-llrb0.0.0-20201120204734-aad293a2328fMore information
go-github-com-biogo-store-kdtree0.0.0-20201120204734-aad293a2328fMore information
go-github-com-biogo-store-interval0.0.0-20201120204734-aad293a2328fMore information
go-github-com-biogo-hts-tabix1.4.4More information
go-github-com-biogo-hts-sam1.4.4More information
go-github-com-biogo-hts-fai1.4.4More information
go-github-com-biogo-hts-csi1.4.4More information
go-github-com-biogo-hts-cram1.4.4More information
go-github-com-biogo-hts-bgzf1.4.4More information
go-github-com-biogo-hts-bam1.4.4More information
go-github-com-biogo-graph0.0.0-20150317020928-057c1989faedMore information
go-github-com-biogo-biogo1.0.4More information
ghc-int-interval-map0.0.0.0More information
gffread0.9.12-1.ba7535fMore information
gffcompare0.10.15-1.be56ef4More information
genrich0.5More information
gemma0.98.3More information
gdcm3.0.20More information
gdc-client1.6.0More information
fxtract2.3More information
fsom0.0.0-1.a6ef318More information
f-seq1.1-1.6ccded3More information
freebayes1.3.7More information
flexbar3.4.0More information
flair1.6.4More information
fit-sne1.2.1More information
filtlong0.2.0-1.d1bb46dMore information
filevercmp0-1.1a9b779More information
fastx-toolkit0.0.14More information
fasttree2.1.10More information
fastqc0.11.9More information
fastp0.23.2More information
fastahack1.0.0More information
fanc0-1.354401eMore information
express-beta-diversity1.0.8More information
express1.5.3More information
exonerate2.4.0More information
ensembl-vep103.1More information
emboss6.5.7More information
eigensoft7.2.1More information
edirect-go-programs13.3.20200128More information
edirect13.3.20200128More information
dropseq-tools1.13More information
discrover1.6.0More information
diamond0.9.30More information
delly0.8.3More information
cwltool3.1.20220119140128More information
cutadapt2.1More information
crossmap0.6.1More information
codingquarry2.0More information
cnvkit0.9.9More information
clustal-omega1.2.4More information
clipper2.0.1More information
checkm1.1.3More information
centrifuge1.0.4More information
cd-hit-auxtools4.8.1More information
cd-hit4.8.1More information
ccwl0.2.0More information
bwa-pssm0.5.11More information
bwa-meth0.2.3More information
bwa0.7.17More information
bowtie11.3.0More information
bowtie2.3.4.3More information
bless1p02More information
blast+2.11.0More information
bits2.13.0-1.3cc4567More information
bismark0.20.1More information
bio-vcf0.9.5More information
bioruby1.5.2More information
bio-locus0.0.7More information
bio-blastxmlparser2.0.4More information
biobambam22.0.182More information
bbmap39.01More information
bandage0.8.1More information
ataqv1.0.0More information
arriba1.0.1More information
adapterremoval2.3.3More information

Target (68ccd1a0d800d824bc5163e206f9227596f7da32)

Packages found in the target revision.

NameVersion
wiggletools1.2.11More information
wfmash0.8.1More information
wfa2-lib2.3.3More information
vsearch2.9.1More information
vembrane0.13.2More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.9More information
vbz-compression1.0.1More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
trf4.09.1More information
transanno0.3.0More information
tophat2.1.1More information
tombo1.5.1More information
tetoolkit2.2.1bMore information
tbsp1.0.0-2.dc30c03More information
taxtastic0.9.2More information
tadbit1.0.1-1.5c4c1ddMore information
tabixpp1.1.2More information
sylamer18-131More information
subread2.0.3More information
stringtie2.2.0More information
stpipeline1.8.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sra-tools2.10.6More information
sortmerna4.3.4More information
snap-aligner2.0.0More information
smithwaterman0.0.0-2.2610e25More information
smithlab-cpp0.1.728a097More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.4More information
seqan3.0.3More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
seek1-1.196ed4cMore information
scvelo0.2.4More information
scregseg0.1.3More information
scallop0.10.5More information
samtools1.2More information
samtools1.14More information
samtools1.12More information
samtools1.10More information
samtools0.1.19More information
samblaster0.1.26More information
sambamba0.8.2More information
salmon1.10.1More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
r-umi4cpackage0.0.1-1.88b07d8More information
ruby-bio-kseq0.0.2More information
r-tsis0.2.0-1.2446029More information
r-tictoc1.2More information
r-spectre0.5.5-1.f6648abMore information
r-snapatac2.0More information
r-skitools0.0.0.9000-1.22d107dMore information
r-signac1.9.0-1.af41427More information
r-shinycell2.0.0-1.aecbd56More information
r-shaman2.0-2.d6944e8More information
r-seuratwrappers0.3.1-1.d28512fMore information
r-seurat-utils1.6.5-1.0b6f5b5More information
r-seqgl1.1.4More information
rseqc3.0.1More information
rsem1.3.3More information
r-scseqcomm0-0.01076e7More information
r-scopeloomr0.13.0-1.99726f5More information
r-scde1.99.2More information
r-sccustomize0.7.0-1.8414d1fMore information
r-rnaseqdtu2.0-1.5bee1e7More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psupertime0.2.6-1.73825a2More information
r-psiplot2.3.0More information
r-presto1.0.0-0.052085dMore information
r-premessa0.3.4-1.68b42bbMore information
r-pore0.24More information
r-plsdabatch0.2.3-1.4aadf3aMore information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
r-pando1.0.1More information
r-omnipathr3.5.5-1.679bb79More information
roary3.12.0More information
r-misha4.1.0More information
r-millefy0.1.9-betaMore information
r-maxprobes0.0.2-1.c2120dbMore information
r-markdownreports4.5.9-1.3ba1103More information
r-markdownhelpers0.2.0-1.793372dMore information
r-liana0.1.5-1.efb1249More information
r-kbet0.99.6-1.f35171dMore information
ritornello2.0.1More information
r-illuminahumanmethylationepicanno-ilm10b5-hg380.0.1-1.3db0691More information
r-icellnet1.0-0.b9c0548More information
r-gutils0.2.0-1.10e36c7More information
r-gtrack0.1.0-1.a694fa3More information
r-giotto1.1.2-1.3c8067cMore information
r-ggsankey0.0.99999-1.be08dd0More information
r-ggexpress0.6.6-1.82f1693More information
r-gg3d0.0.0.9000-1.ffdd837More information
r-gchain0.2.0-1.dc393e8More information
repeat-masker4.1.2-p1More information
r-dyngen1.0.5More information
r-dropbead0-2.d746c6fMore information
r-doubletfinder2.0.3-1.554097bMore information
r-doubletcollection1.1.0-1.c0d62f1More information
r-domultibarheatmap0.1.0-1.9e65afaMore information
r-disgenet2r0.99.2-1.8d8ce37More information
r-demuxmix1.1.1-1.09a7918More information
r-demultiplex21.0.0-1.e42bc83More information
r-demultiplex1.0.2-1.6e2a142More information
r-cytonorm0.0.10-1.166f9ffMore information
r-cytoexplorer1.1.0-1.0efb1ccMore information
r-cytobackbone1.0.0-1.4c1a0a3More information
r-cssam1.4-1.9ec58c9More information
r-copykat1.0.8-0.256de33More information
r-compgenomrdata0.1.0-1.24484cbMore information
r-circus0.1.7More information
r-chromvarmotifs0.2.0-1.38bed55More information
r-chromunity0.0.1-1.09fce8bMore information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
r-catch1.0-1.196ddd5More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
r-bamutils0.0.0.9000-1.639dba9More information
raxml8.2.12More information
r-ascat2.5.2More information
r-archr1.0.1-1.92ab814More information
python-vireosnp0.5.7More information
python-velocyto0.17.17More information
python-twobitreader3.1.6More information
python-taggd0.3.6More information
python-strawc0.0.2.1More information
python-slamdunk0.4.3More information
python-scrublet0.2.3More information
python-screed1.1.2More information
python-scikit-bio0.5.7More information
python-schema-salad8.2.20211116214159More information
python-scanpy1.9.1More information
python-scanorama1.7.2More information
python-pyvcf0.6.8-0.476169cMore information
python-pyspoa0.0.5More information
python-pysam0.20.0More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.5More information
python-pyfit-sne1.2.1More information
python-pyfaidx0.7.2.1More information
python-pyega33.4.1More information
python-pybigwig0.3.17More information
python-pybbi0.3.0More information
python-py2bit0.3.0More information
python-plastid0.6.0More information
python-ont-fast5-api4.0.0More information
python-mygene3.2.2More information
python-multivelo0.1.2More information
python-mgatk0.6.7More information
python-mappy2.24More information
python-loompy3.0.7More information
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