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Base (99ca1ae4f852387ea0db16a9143726ff9b5a3f84)

Packages found in the base revision.

NameVersion
vsearch2.9.1More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.2More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
tombo1.5.1More information
tbsp1.0.0-1.ec8fff4More information
taxtastic0.8.11More information
tadbit1.0.1More information
tabixpp1.1.0More information
subread1.6.0More information
stringtie1.2.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sortmerna2.1bMore information
snap-aligner1.0beta.18More information
smithwaterman0.0.0-2.2610e25More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.0More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
samblaster0.1.24More information
sambamba0.8.0More information
salmon1.4.0More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
ruby-bio-kseq0.0.2More information
r-snapatac2.0More information
r-signac1.1.1-1.e0512d3More information
r-shinycell2.0.0-1.aecbd56More information
r-seqgl1.1.4More information
r-scde1.99.2More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psiplot2.3.0More information
r-pore0.24More information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
ritornello2.0.1More information
r-dropbead0-2.d746c6fMore information
r-demultiplex1.0.2-1.6e2a142More information
r-cssam1.4-1.9ec58c9More information
r-circus0.1.5More information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
r-ascat2.5.2More information
r-archr1.0.0-1.46b519fMore information
python-velocyto0.17.17More information
python-scanpy1.7.2More information
python-pyvcf0.6.8More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.3More information
python-pyfit-sne1.0.1More information
python-pyfaidx0.5.8More information
python-ont-fast5-api1.4.4More information
python-mappy2.18More information
python-loompy2.0.17More information
python-intervaltree3.0.2More information
python-iced0.5.8More information
python-hicmatrix15More information
python-hicexplorer2.1.4More information
python-hic2cool0.8.3More information
python-gffutils0.9-1.4034c54More information
python-drep3.2.0More information
python-cooler0.8.11More information
python-cgatcore0.6.7More information
python-bbknn1.3.6More information
python2-pyfaidx0.5.8More information
prinseq0.20.4More information
pplacer1.1.alpha19More information
poretools0.6.0-1.e426b1fMore information
porechop0.2.3-1.289d5dcMore information
piranha1.2.1-1.0466d36More information
pigx-scrnaseq1.1.7More information
pigx-sars-cov2-ww0.0.2More information
pigx-rnaseq0.0.17More information
pigx-chipseq0.0.52More information
pigx-bsseq0.1.5More information
pigx0.0.3More information
phylip3.696More information
phast1.5More information
perl-cworld-dekker1.01More information
pepr1.0.9More information
pardre1.1.5-1More information
paml4.9eMore information
ngshmmalign0.1.1More information
ngless1.1.0More information
nanosv1.2.4More information
nanopolish0.11.1-1.6331dc4More information
multiqc1.10.1More information
multichoose1.0.3More information
minimap22.18More information
miniasm0.3More information
methyldackel0.5.1More information
mantis0-1.4ffd171More information
lofreq2.1.5More information
libsbml5.18.0More information
libmaus22.0.786More information
libgff2.0.0More information
kraken22.1.1More information
kentutils302.0.0More information
kallisto0.46.2More information
java-forester1.005More information
java-forester0-1.86b07efMore information
java-biojava-phylo4.2.11More information
java-biojava-phylo4.0.0More information
java-biojava-core4.2.11More information
java-biojava-core4.0.0More information
java-biojava-alignment4.2.11More information
java-biojava-alignment4.0.0More information
jamm1.0.7.6More information
intervaltree0.0.0-1.b90527fMore information
instrain1.5.2More information
infernal1.1.4More information
indelfixer1.1More information
imp2.13.0More information
gffread0.9.12-1.ba7535fMore information
gffcompare0.10.15-1.be56ef4More information
gess1.0More information
genrich0.5More information
fsom0.0.0-1.a6ef318More information
f-seq1.1-1.6ccded3More information
freebayes1.3.5More information
fit-sne1.2.1More information
find-circ1.2-1.8655dcaMore information
filtlong0.2.0-1.d1bb46dMore information
filevercmp0-1.1a9b779More information
fastahack1.0.0More information
ensembl-vep103.1More information
emboss6.5.7More information
dropseq-tools1.13More information
cnvkit0.9.5More information
checkm1.1.3More information
bits2.13.0-1.3cc4567More information
bismark0.20.1More information
bio-vcf0.9.5More information
bioruby1.5.2More information
bio-locus0.0.7More information
bio-blastxmlparser2.0.4More information
biobambam22.0.182More information
bbmap38.90More information
bandage0.8.1More information
ataqv1.0.0More information
arriba1.0.1More information
adapterremoval2.3.0More information

Target (3e5eff8c30f80d38c90c65d915bbd7359aca51a7)

Packages found in the target revision.

NameVersion
vsearch2.9.1More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.2More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
tombo1.5.1More information
tbsp1.0.0-1.ec8fff4More information
taxtastic0.8.11More information
tadbit1.0.1More information
tabixpp1.1.0More information
subread1.6.0More information
stringtie1.2.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sortmerna2.1bMore information
snap-aligner1.0beta.18More information
smithwaterman0.0.0-2.2610e25More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.0More information
seqan3.0.3More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
samblaster0.1.24More information
sambamba0.8.0More information
salmon1.4.0More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
ruby-bio-kseq0.0.2More information
r-snapatac2.0More information
r-signac1.1.1-1.e0512d3More information
r-shinycell2.0.0-1.aecbd56More information
r-seqgl1.1.4More information
r-scde1.99.2More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psiplot2.3.0More information
r-pore0.24More information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
ritornello2.0.1More information
r-dropbead0-2.d746c6fMore information
r-demultiplex1.0.2-1.6e2a142More information
r-cssam1.4-1.9ec58c9More information
r-circus0.1.5More information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
r-ascat2.5.2More information
r-archr1.0.0-1.46b519fMore information
python-velocyto0.17.17More information
python-scanpy1.7.2More information
python-pyvcf0.6.8More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.3More information
python-pyfit-sne1.0.1More information
python-pyfaidx0.5.8More information
python-ont-fast5-api1.4.4More information
python-mappy2.18More information
python-loompy2.0.17More information
python-intervaltree3.0.2More information
python-iced0.5.8More information
python-hicmatrix15More information
python-hicexplorer2.1.4More information
python-hic2cool0.8.3More information
python-gffutils0.9-1.4034c54More information
python-drep3.2.0More information
python-cooler0.8.11More information
python-cgatcore0.6.7More information
python-bbknn1.3.6More information
python2-pyfaidx0.5.8More information
prinseq0.20.4More information
pplacer1.1.alpha19More information
poretools0.6.0-1.e426b1fMore information
porechop0.2.3-1.289d5dcMore information
piranha1.2.1-1.0466d36More information
pigx-scrnaseq1.1.7More information
pigx-sars-cov2-ww0.0.2More information
pigx-rnaseq0.0.17More information
pigx-chipseq0.0.52More information
pigx-bsseq0.1.5More information
pigx0.0.3More information
phylip3.696More information
phast1.5More information
perl-cworld-dekker1.01More information
pepr1.0.9More information
pardre1.1.5-1More information
paml4.9eMore information
ngshmmalign0.1.1More information
ngless1.1.0More information
nanosv1.2.4More information
nanopolish0.11.1-1.6331dc4More information
multiqc1.10.1More information
multichoose1.0.3More information
minimap22.18More information
miniasm0.3More information
methyldackel0.5.1More information
mantis0-1.4ffd171More information
lofreq2.1.5More information
libsbml5.18.0More information
libmaus22.0.786More information
libgff2.0.0More information
kraken22.1.1More information
kentutils302.0.0More information
kallisto0.46.2More information
java-forester1.005More information
java-forester0-1.86b07efMore information
java-biojava-phylo4.2.11More information
java-biojava-phylo4.0.0More information
java-biojava-core4.2.11More information
java-biojava-core4.0.0More information
java-biojava-alignment4.2.11More information
java-biojava-alignment4.0.0More information
jamm1.0.7.6More information
intervaltree0.0.0-1.b90527fMore information
instrain1.5.2More information
infernal1.1.4More information
indelfixer1.1More information
imp2.13.0More information
gffread0.9.12-1.ba7535fMore information
gffcompare0.10.15-1.be56ef4More information
gess1.0More information
genrich0.5More information
fsom0.0.0-1.a6ef318More information
f-seq1.1-1.6ccded3More information
freebayes1.3.5More information
fit-sne1.2.1More information
find-circ1.2-1.8655dcaMore information
filtlong0.2.0-1.d1bb46dMore information
filevercmp0-1.1a9b779More information
fastahack1.0.0More information
ensembl-vep103.1More information
emboss6.5.7More information
dropseq-tools1.13More information
cnvkit0.9.5More information
checkm1.1.3More information
bits2.13.0-1.3cc4567More information
bismark0.20.1More information
bio-vcf0.9.5More information
bioruby1.5.2More information
bio-locus0.0.7More information
bio-blastxmlparser2.0.4More information
biobambam22.0.182More information
bbmap38.90More information
bandage0.8.1More information
ataqv1.0.0More information
arriba1.0.1More information
adapterremoval2.3.0More information