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Base (fab80c36720bbdb85730708d0dc5fceabcc22a6e)

Packages found in the base revision.

NameVersion
vsearch2.9.1More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.2More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
trf4.09.1More information
tophat2.1.1More information
tombo1.5.1More information
tetoolkit2.0.3More information
tbsp1.0.0-1.ec8fff4More information
taxtastic0.8.11More information
tadbit1.0.1More information
tabixpp1.1.0More information
subread1.6.0More information
stringtie1.2.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sra-tools2.10.6More information
sortmerna2.1bMore information
snap-aligner1.0beta.18More information
smithwaterman0.0.0-2.2610e25More information
smithlab-cpp0.1.728a097More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.0More information
seqan3.0.3More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
seek0-1.2329130More information
scregseg0.1.1More information
samtools1.12More information
samtools1.10More information
samtools0.1.19More information
samblaster0.1.24More information
sambamba0.8.0More information
salmon1.4.0More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
r-umi4cpackage0.0.1-1.88b07d8More information
ruby-bio-kseq0.0.2More information
r-spectre0.5.5-1.f6648abMore information
r-snapatac2.0More information
r-signac1.1.1-1.e0512d3More information
r-shinycell2.0.0-1.aecbd56More information
r-shaman2.0-2.d6944e8More information
r-seqgl1.1.4More information
rseqc3.0.1More information
rsem1.3.1More information
r-scde1.99.2More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psiplot2.3.0More information
r-presto1.0.0-0.052085dMore information
r-pore0.24More information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
roary3.12.0More information
r-misha4.1.0More information
ritornello2.0.1More information
repeat-masker4.1.1More information
r-dropbead0-2.d746c6fMore information
r-demultiplex1.0.2-1.6e2a142More information
r-cytonorm0.0.7-1.e4b9d34More information
r-cssam1.4-1.9ec58c9More information
r-circus0.1.5More information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
r-catch1.0-1.196ddd5More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
raxml8.2.12More information
r-ascat2.5.2More information
r-archr1.0.0-1.46b519fMore information
qtltools1.3.1More information
python-velocyto0.17.17More information
python-twobitreader3.1.6More information
python-strawc0.0.2.1More information
python-screed1.0More information
python-schema-salad7.1.20210316164414More information
python-scanpy1.8.1More information
python-pyvcf0.6.8More information
python-pyspoa0.0.5More information
python-pysam0.16.0.1More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.3More information
python-pyfit-sne1.0.1More information
python-pyfaidx0.5.8More information
python-pyega33.4.1More information
python-pybigwig0.3.17More information
python-pybbi0.3.0More information
python-py2bit0.3.0More information
python-plastid0.4.8More information
python-pairtools0.3.0More information
python-ont-fast5-api1.4.4More information
python-mygene3.2.2More information
python-mappy2.18More information
python-loompy2.0.17More information
python-intervaltree3.0.2More information
python-iced0.5.8More information
python-hicmatrix15More information
python-hicexplorer2.1.4More information
python-hic2cool0.8.3More information
python-gffutils0.9-1.4034c54More information
python-fastalite0.3More information
python-drep3.2.0More information
python-dnaio0.3More information
python-dna-features-viewer3.0.3More information
python-dendropy4.4.0More information
python-deeptoolsintervals0.1.9More information
python-deeptools3.4.3More information
python-cooler0.8.11More information
python-coolbox0.3.8More information
python-cgatcore0.6.7More information
python-bx-python0.8.2More information
python-bwapy0.1.4More information
python-biothings-client0.2.6More information
python-biopython1.76More information
python-biopython1.73More information
python-biom-format2.1.7More information
python-bbknn1.3.6More information
python2-warpedlmm0.21More information
python2-twobitreader3.1.6More information
python2-screed1.0More information
python2-pysam0.16.0.1More information
python2-pyfaidx0.5.8More information
python2-pybigwig0.3.17More information
python2-plastid0.4.8More information
python2-pbcore1.2.10More information
python2-htseq0.9.1More information
python2-fastalite0.3More information
python2-dendropy4.4.0More information
python2-bx-python0.8.2More information
python2-biopython1.76More information
python2-biom-format2.1.7More information
pyicoteo2.0.7More information
proteinortho6.0.14More information
prodigal2.6.3More information
prinseq0.20.4More information
preseq2.0.3More information
prank170427More information
pplacer1.1.alpha19More information
poretools0.6.0-1.e426b1fMore information
porechop0.2.3-1.289d5dcMore information
plink-ng2.00a2.3More information
plink1.07More information
piranha1.2.1-1.0466d36More information
pigx-scrnaseq1.1.7More information
pigx-sars-cov2-ww0.0.3More information
pigx-rnaseq0.0.19More information
pigx-chipseq0.0.53More information
pigx-bsseq0.1.6More information
pigx0.0.3More information
phylip3.696More information
phast1.5More information
perl-cworld-dekker1.01More information
perl-bio-db-hts3.01More information
pepr1.0.9More information
pbtranscript-tofu2.2.3.8f5467fMore information
pardre2.2.5More information
paml4.9eMore information
orfm0.7.1More information
ngs-sdk2.10.5More information
ngshmmalign0.1.1More information
ngless1.3.0More information
newick-utils1.6-1.da121155More information
ncbi-vdb2.10.6More information
nanosv1.2.4More information
nanopolish0.11.1-1.6331dc4More information
muscle3.8.1551More information
multiqc1.10.1More information
multichoose1.0.3More information
mosaik2.2.30More information
mosaicatcher0.3.1More information
miso0.5.4More information
minimap22.18More information
miniasm0.3More information
minced0.3.2More information
methyldackel0.5.1More information
metabat2.12.1More information
megadepth1.1.1More information
mash2.1More information
mantis0-1.4ffd171More information
mafft7.475More information
macs2.2.7.1More information
lofreq2.1.5More information
libsbml5.18.0More information
libmaus22.0.786More information
libgff2.0.0More information
libbigwig0.4.4More information
kraken22.1.1More information
khmer3.0.0a3More information
kentutils302.0.0More information
kallisto0.46.2More information
kaiju1.6.3More information
jellyfish2.3.0More information
java-picard2.3.0More information
java-picard2.10.3More information
java-picard1.113More information
java-ngs2.10.5More information
java-htsjdk2.3.0More information
java-htsjdk2.14.3More information
java-htsjdk2.10.1More information
java-forester1.005More information
java-forester0-1.86b07efMore information
java-biojava-phylo4.2.11More information
java-biojava-phylo4.0.0More information
java-biojava-core4.2.11More information
java-biojava-core4.0.0More information
java-biojava-alignment4.2.11More information
java-biojava-alignment4.0.0More information
jamm1.0.7.6More information
ivar1.3.1More information
intervaltree0.0.0-1.b90527fMore information
instrain1.5.4More information
infernal1.1.4More information
indelfixer1.1More information
imp2.13.0More information
idr2.0.3More information
htslib1.9More information
htslib1.12More information
htslib1.10More information
htseq0.9.1More information
hmmer3.3.2More information
hisat22.2.1More information
hisat0.1.4More information
grit2.0.5More information
ghc-int-interval-map0.0.0.0More information
gffread0.9.12-1.ba7535fMore information
gffcompare0.10.15-1.be56ef4More information
gess1.0More information
genrich0.5More information
gemma0.98.3More information
gdc-client1.6.0More information
fxtract2.3More information
fsom0.0.0-1.a6ef318More information
f-seq1.1-1.6ccded3More information
freebayes1.3.5More information
fraggenescan1.30More information
flexbar3.4.0More information
fit-sne1.2.1More information
find-circ1.2-1.8655dcaMore information
filtlong0.2.0-1.d1bb46dMore information
filevercmp0-1.1a9b779More information
fastx-toolkit0.0.14More information
fasttree2.1.10More information
fastqc0.11.5More information
fastp0.20.1More information
fastahack1.0.0More information
express-beta-diversity1.0.8More information
express1.5.3More information
exonerate2.4.0More information
ensembl-vep103.1More information
emboss6.5.7More information
eigensoft7.2.1More information
edirect-go-programs13.3.20200128More information
edirect13.3.20200128More information
dropseq-tools1.13More information
discrover1.6.0More information
diamond0.9.30More information
delly0.8.3More information
cwltool3.0.20210319143721More information
cutadapt2.1More information
crossmap0.3.8More information
codingquarry2.0More information
cnvkit0.9.5More information
clustal-omega1.2.4More information
clipper2.0More information
ciri-long1.0.2More information
circtools1.0.0More information
checkm1.1.3More information
cd-hit4.6.8More information
bwa-pssm0.5.11More information
bwa-meth0.2.2More information
bwa0.7.17More information
bppsuite2.2.0-1.c516147More information
bpp-seq2.2.0-1.6cfa079More information
bpp-popgen2.2.0-1.e472bacMore information
bpp-phyl2.2.0-1.0c07167More information
bpp-core2.2.0-1.7d8bcedMore information
bowtie11.3.0More information
bowtie2.3.4.3More information
bless1p02More information
blast+2.11.0More information
bits2.13.0-1.3cc4567More information
bismark0.20.1More information
bio-vcf0.9.5More information
biosoup0.10.0More information
bioruby1.5.2More information
bioperl-minimal1.7.0More information
bioparser3.0.13More information
bio-locus0.0.7More information
bio-blastxmlparser2.0.4More information
biobambam22.0.182More information
bbmap38.90More information
bandage0.8.1More information
ataqv1.0.0More information
arriba1.0.1More information
adapterremoval2.3.0More information

Target (32d5fb01f86d4d42f844d6d57702043c7d56b137)

Packages found in the target revision.

NameVersion
vsearch2.9.1More information
velvet1.2.10More information
vcftools0.1.16More information
vcflib1.0.2More information
variant-tools3.1.2More information
umi-tools1.0.0More information
trim-galore0.6.6More information
trf4.09.1More information
tophat2.1.1More information
tombo1.5.1More information
tetoolkit2.0.3More information
tbsp1.0.0-1.ec8fff4More information
taxtastic0.8.11More information
tadbit1.0.1More information
tabixpp1.1.0More information
subread1.6.0More information
stringtie1.2.1More information
starlong2.7.8aMore information
star2.7.8aMore information
star2.7.3aMore information
sra-tools2.10.6More information
sortmerna2.1bMore information
snap-aligner1.0beta.18More information
smithwaterman0.0.0-2.2610e25More information
smithlab-cpp0.1.728a097More information
sjcount3.2-1.292d391More information
shorah1.99.2More information
seqtk1.3More information
seqmagick0.8.0More information
seqan3.0.3More information
seqan2.4.0More information
seqan1.4.2More information
segemehl0.3.4More information
seek0-1.2329130More information
scregseg0.1.1More information
samtools1.12More information
samtools1.10More information
samtools0.1.19More information
samblaster0.1.24More information
sambamba0.8.0More information
salmon1.4.0More information
sailfish0.10.1More information
r-xbioc0.1.16-1.6ff0670More information
r-velocyto0.6-1.d779034More information
r-umi4cpackage0.0.1-1.88b07d8More information
ruby-bio-kseq0.0.2More information
r-spectre0.5.5-1.f6648abMore information
r-snapatac2.0More information
r-signac1.1.1-1.e0512d3More information
r-shinycell2.0.0-1.aecbd56More information
r-shaman2.0-2.d6944e8More information
r-seqgl1.1.4More information
rseqc3.0.1More information
rsem1.3.1More information
r-scde1.99.2More information
r-raremetals20.1More information
r-r4rna0.1.4More information
r-psiplot2.3.0More information
r-presto1.0.0-0.052085dMore information
r-pore0.24More information
r-phantompeakqualtools1.2.2-1.8d2b2d1More information
roary3.12.0More information
r-misha4.1.0More information
ritornello2.0.1More information
repeat-masker4.1.1More information
r-dropbead0-2.d746c6fMore information
r-demultiplex1.0.2-1.6e2a142More information
r-cytonorm0.0.7-1.e4b9d34More information
r-cssam1.4-1.9ec58c9More information
r-circus0.1.5More information
r-chipkernels1.1-1.c9cfcacMore information
r-centipede1.2More information
r-cellchat1.0.0-1.21edd22More information
r-catch1.0-1.196ddd5More information
rcas-web0.1.0More information
r-bseqsc1.0-1.fef3f3eMore information
r-battenberg2.2.9More information
raxml8.2.12More information
r-ascat2.5.2More information
r-archr1.0.0-1.46b519fMore information
qtltools1.3.1More information
python-velocyto0.17.17More information
python-twobitreader3.1.6More information
python-strawc0.0.2.1More information
python-screed1.0More information
python-schema-salad7.1.20210316164414More information
python-scanpy1.8.1More information
python-pyvcf0.6.8More information
python-pyspoa0.0.5More information
python-pysam0.16.0.1More information
python-pypairix0.3.7More information
python-pyliftover0.4More information
python-pygenometracks3.3More information
python-pyfit-sne1.0.1More information
python-pyfaidx0.5.8More information
python-pyega33.4.1More information
python-pybigwig0.3.17More information
python-pybbi0.3.0More information
python-py2bit0.3.0More information
python-plastid0.4.8More information
python-pairtools0.3.0More information
python-ont-fast5-api1.4.4More information
python-mygene3.2.2More information
python-mappy2.18More information
python-loompy2.0.17More information
python-intervaltree3.0.2More information
python-iced0.5.8More information
python-hicmatrix15More information
python-hicexplorer2.1.4More information
python-hic2cool0.8.3More information
python-gffutils0.9-1.4034c54More information
python-fastalite0.3More information
python-drep3.2.0More information
python-dnaio0.3More information
python-dna-features-viewer3.0.3More information
python-dendropy4.4.0More information
python-deeptoolsintervals0.1.9More information
python-deeptools3.4.3More information
python-cooler0.8.11More information
python-coolbox0.3.8More information
python-cgatcore0.6.7More information
python-bx-python0.8.2More information
python-bwapy0.1.4More information
python-biothings-client0.2.6More information
python-biopython1.76More information
python-biopython1.73More information
python-biom-format2.1.10More information
python-bbknn1.3.6More information
python2-warpedlmm0.21More information
python2-twobitreader3.1.6More information
python2-screed1.0More information
python2-pysam0.16.0.1More information
python2-pyfaidx0.5.8More information
python2-pybigwig0.3.17More information
python2-plastid0.4.8More information
python2-pbcore1.2.10More information
python2-htseq0.9.1More information
python2-fastalite0.3More information
python2-dendropy4.4.0More information
python2-bx-python0.8.2More information
python2-biopython1.76More information
python2-biom-format2.1.10More information
pyicoteo2.0.7More information
proteinortho6.0.14More information
prodigal2.6.3More information
prinseq0.20.4More information
preseq2.0.3More information
prank170427More information
pplacer1.1.alpha19More information
poretools0.6.0-1.e426b1fMore information
porechop0.2.3-1.289d5dcMore information
plink-ng2.00a2.3More information
plink1.07More information
piranha1.2.1-1.0466d36More information
pigx-scrnaseq1.1.7More information
pigx-sars-cov2-ww0.0.3More information
pigx-rnaseq0.0.19More information
pigx-chipseq0.0.53More information
pigx-bsseq0.1.6More information
pigx0.0.3More information
phylip3.696More information
phast1.5More information
perl-cworld-dekker1.01More information
perl-bio-db-hts3.01More information
pepr1.0.9More information
pbtranscript-tofu2.2.3.8f5467fMore information
pardre2.2.5More information
paml4.9eMore information
orfm0.7.1More information
ngs-sdk2.10.5More information
ngshmmalign0.1.1More information
ngless1.3.0More information
newick-utils1.6-1.da121155More information
ncbi-vdb2.10.6More information
nanosv1.2.4More information
nanopolish0.11.1-1.6331dc4More information
muscle3.8.1551More information
multiqc1.10.1More information
multichoose1.0.3More information
mosaik2.2.30More information
mosaicatcher0.3.1More information
miso0.5.4More information
minimap22.18More information
miniasm0.3More information
minced0.3.2More information
methyldackel0.5.1More information
metabat2.12.1More information
megadepth1.1.1More information
mash2.1More information
mantis0-1.4ffd171More information
mafft7.475More information
macs2.2.7.1More information
lofreq2.1.5More information
libsbml5.18.0More information
libmaus22.0.786More information
libgff2.0.0More information
libbigwig0.4.4More information
kraken22.1.1More information
khmer3.0.0a3More information
kentutils302.0.0More information
kallisto0.46.2More information
kaiju1.6.3More information
jellyfish2.3.0More information
java-picard2.3.0More information
java-picard2.10.3More information
java-picard1.113More information
java-ngs2.10.5More information
java-htsjdk2.3.0More information
java-htsjdk2.14.3More information
java-htsjdk2.10.1More information
java-forester1.005More information
java-forester0-1.86b07efMore information
java-biojava-phylo4.2.11More information
java-biojava-phylo4.0.0More information
java-biojava-core4.2.11More information
java-biojava-core4.0.0More information
java-biojava-alignment4.2.11More information
java-biojava-alignment4.0.0More information
jamm1.0.7.6More information
ivar1.3.1More information
intervaltree0.0.0-1.b90527fMore information
instrain1.5.4More information
infernal1.1.4More information
indelfixer1.1More information
imp2.13.0More information
idr2.0.3More information
htslib1.9More information
htslib1.12More information
htslib1.10More information
htseq0.9.1More information
hmmer3.3.2More information
hisat22.2.1More information
hisat0.1.4More information
grit2.0.5More information
ghc-int-interval-map0.0.0.0More information
gffread0.9.12-1.ba7535fMore information
gffcompare0.10.15-1.be56ef4More information
gess1.0More information
genrich0.5More information
gemma0.98.3More information
gdc-client1.6.0More information
fxtract2.3More information
fsom0.0.0-1.a6ef318More information
f-seq1.1-1.6ccded3More information
freebayes1.3.5More information
fraggenescan1.30More information
flexbar3.4.0More information
fit-sne1.2.1More information
find-circ1.2-1.8655dcaMore information
filtlong0.2.0-1.d1bb46dMore information
filevercmp0-1.1a9b779More information
fastx-toolkit0.0.14More information
fasttree2.1.10More information
fastqc0.11.5More information
fastp0.20.1More information
fastahack1.0.0More information
express-beta-diversity1.0.8More information
express1.5.3More information
exonerate2.4.0More information
ensembl-vep103.1More information
emboss6.5.7More information
eigensoft7.2.1More information
edirect-go-programs13.3.20200128More information
edirect13.3.20200128More information
dropseq-tools1.13More information
discrover1.6.0More information
diamond0.9.30More information
delly0.8.3More information
cwltool3.0.20210319143721More information
cutadapt2.1More information
crossmap0.3.8More information
codingquarry2.0More information
cnvkit0.9.5More information
clustal-omega1.2.4More information
clipper2.0More information
ciri-long1.0.2More information
circtools1.0.0More information
checkm1.1.3More information
cd-hit4.6.8More information
bwa-pssm0.5.11More information
bwa-meth0.2.2More information
bwa0.7.17More information
bppsuite2.2.0-1.c516147More information
bpp-seq2.2.0-1.6cfa079More information
bpp-popgen2.2.0-1.e472bacMore information
bpp-phyl2.2.0-1.0c07167More information
bpp-core2.2.0-1.7d8bcedMore information
bowtie11.3.0More information
bowtie2.3.4.3More information
bless1p02More information
blast+2.11.0More information
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