Phylogenetic analysis with space/time models
Phylogenetic Analysis with Space/Time models (PHAST) is a collection of command-line programs and supporting libraries for comparative and evolutionary genomics. Best known as the search engine behind the Conservation tracks in the University of California, Santa Cruz (UCSC) Genome Browser, PHAST also includes several tools for phylogenetic modeling, functional element identification, as well as utilities for manipulating alignments, trees and genomic annotations.
| Linter | Message | Location |
|---|---|---|
| formatting Look for formatting issues in the source | tabulation on line 20391, column 31 | |
| optional-tests Make sure tests are only run when requested | the 'check' phase should respect #:tests? |