Tool for fast counting of k-mers in DNA
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in a binary format, which can be translated into a human-readable text format using the jellyfish dump
command, or queried for specific k-mers with jellyfish query
.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/57jdyq7czzmfw3r8zapszmh98cysv94x-jellyfish-2.3.0.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/12i8bhv8sgq0d7yvhzz7b76ndlas3i8d-jellyfish-2.3.0.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/7i7yahf7yknz9van90d1sj6lkcqxcf1z-jellyfish-2.3.0.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/bg9nyrljbj4f4623xxiy2h974dravx8l-jellyfish-2.3.0.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/8fvbxsc1ya6h3519br8paxxr0xi8xza3-jellyfish-2.3.0.drv | |
mips64el-linux | /gnu/store/mrgv0i703arcgbkv0bjlw4140hc9vayv-jellyfish-2.3.0.drv | ||
aarch64-linux | /gnu/store/x5xnrwc4j8h6qxiabpkc7nlxhbs1fnf8-jellyfish-2.3.0.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 4696 is way too long (95 characters) | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' |