Full masked genome sequences for Fly
This package provides full masked genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 190 is way too long (95 characters) | |
derivation Report failure to compile a package to a derivation | failed to create x86_64-linux derivation: path ‘/gnu/store/1vs6qp5gg2ilqy51k8ikbr3qr9nqdgf8-r-bsgenome-1.54.0.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create i686-linux derivation: path ‘/gnu/store/0vbwl4qxd7i2bg14pwwa3d65iirvv2fr-r-rhtslib-1.18.0.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: path ‘/gnu/store/0p3fdlwrsmz31imm4a32z63b9x9zay6v-r-s4vectors-0.24.1.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: path ‘/gnu/store/09hhdxcfrm56afpglx3ff2dj4ibfl92x-sed-4.7.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: path ‘/gnu/store/09ysrbjfiynndsy2b7lrzbm7l1r4j189-r-biocgenerics-0.32.0.drv’ is not valid |