Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/sy9mv4a0z7qawasqywbyzzvqjhbz2dkl-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/jkyp721mqsy4mg5xkakhk7x7r76gs6l1-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/7msxpg4qijqr5qw32vjsy2adkiywagwn-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/vh03d129hvi34229mp84cmymmma91n70-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/nvsws6nygyvf7gn33f3j2k6yyz6b35ca-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
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description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |