Mark duplicates in paired-end SAM files
Samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/m7fkz15f4glz81rksbpfzpq348v839am-samblaster-0.1.24.drv | ||
| mips64el-linux | /gnu/store/hf0xcj87j27bbzl32h6prijmrcx5kj2w-samblaster-0.1.24.drv | ||
| i686-linux | /gnu/store/0shrb8khjbcgdvvmz0fk7a60w5hbffdm-samblaster-0.1.24.drv | ||
| armhf-linux | /gnu/store/wh60fc0zq8i059rvsghqnvah2lyqm840-samblaster-0.1.24.drv | ||
| aarch64-linux | /gnu/store/ndx54wlgysdmzfm1vldyp9p986w8zyiy-samblaster-0.1.24.drv |
| Linter | Message | Location |
|---|---|---|
| description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 263 | |
| derivation Report failure to compile a package to a derivation | failed to create i686-linux derivation: path ‘/gnu/store/imq41gd3q2767il9gq6mqh5cv44x09rf-guile-2.2.6.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: path ‘/gnu/store/9wn798a6w534mnn4f28lglbjmib9n392-zlib-1.2.11.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: path ‘/gnu/store/0afbxr7962z9ci6kw840n088qsmyz8lr-guile-2.2.6.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: path ‘/gnu/store/aiwgcl5dppar2s8l408bshywjybsy3nd-zlib-1.2.11.drv’ is not valid |