Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/b7prgpb8an5gfdbdkqv9r832bmvm3565-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/cbfq4kln8bv9j66a5jm33mgjivkxmkwm-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/15vy3kza8f3csx7jxnavyxbbphk5xfl5-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/y38dawzgbrh4d4armdy43821kngdrxm7-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/wicngqi7cb4rvi91z47alyd9w7ikpwgv-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/cm2smj1hc2v62zkhdhpqksarqzqs6bm1-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/mbh04yls2k715dicdgb64y72sjsndkcw-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/0yslpn2nsrzq4vk3g6y8nn2arxkx8ap2-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/rjyjgb3hlcnl7q340sqsavj3dvg72lr9-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/1hrz6gzlbqvp756fkr7ip7m7gqfcy1k1-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |