R Interface to CoreArray Genomic Data Structure (GDS) Files
This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to read a GDS file in parallel with multiple R processes supported by the package parallel.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/pnhs2gp95k2i9q50wr6dqav2kax7qnlh-r-gdsfmt-1.30.0.drv | ||
| powerpc-linux | /gnu/store/0xcyjra1a8cm8jc5zfmvx5scy8vanpnf-r-gdsfmt-1.30.0.drv | ||
| powerpc64le-linux | /gnu/store/70canvnf1yphrxy822bzrmwdsvm5bwzx-r-gdsfmt-1.30.0.drv | ||
| mips64el-linux | /gnu/store/1bkj5gg8b60pn94a5chwgcdwikds4v5r-r-gdsfmt-1.30.0.drv | ||
| i686-linux | /gnu/store/swn30pkkiiddsvshbj9zpq3hcbxvf3lz-r-gdsfmt-1.30.0.drv | ||
| i586-gnu | /gnu/store/4ly5j9n0fzavni6vyfqb32lrv443km1k-r-gdsfmt-1.30.0.drv | ||
| armhf-linux | /gnu/store/qpqdkp5vw8gqzf5w9pk01sp43imjki3c-r-gdsfmt-1.30.0.drv | ||
| aarch64-linux | /gnu/store/qazi3aj8xf1d0s5blr7i7zf5lw7w00v0-r-gdsfmt-1.30.0.drv |
| Linter | Message | Location |
|---|---|---|
| formatting Look for formatting issues in the source | tabulation on line 10797, column 17 |