Tools for manipulating high-throughput sequencing data and formats
Picard is a set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats. Picard is implemented using the HTSJDK Java library to support accessing file formats that are commonly used for high-throughput sequencing data such as SAM, BAM, CRAM and VCF.
| Linter | Message | Location |
|---|---|---|
| formatting Look for formatting issues in the source | line 4583 is way too long (96 characters) | |
| formatting Look for formatting issues in the source | line 4584 is way too long (117 characters) | |
| input-labels Identify input labels that do not match package names | label 'jdk' does not match package name 'icedtea:jdk' | |
| input-labels Identify input labels that do not match package names | label 'java-snappy-1' does not match package name 'java-snappy' | |
| input-labels Identify input labels that do not match package names | label 'java-commons-jexl-2' does not match package name 'java-commons-jexl' |