Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/myhfz0b4gvlgdmchsi0wf0mlpgwcbjqk-salmon-1.4.0.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/alq8p5xfh10f7hpbs95ynfd73drb171m-salmon-1.4.0.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/7qv6k920jdm2j24ly9bb1ah4fy8jd13s-salmon-1.4.0.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/kd2m6r6blidk736bxivgbcg3gczv7ip1-salmon-1.4.0.drv | |
powerpc64le-linux | /gnu/store/gqxa462k1p3rw55ynx8f0sykwh3qdncd-salmon-1.4.0.drv | ||
mips64el-linux | /gnu/store/c6bx9bpnr8mvxia3fq4fmfjx45h0yh2i-salmon-1.4.0.drv | ||
i686-linux | /gnu/store/2g22na5c1wrkczyq732gj5jyfl7yqjf3-salmon-1.4.0.drv | ||
i586-gnu | /gnu/store/qpgmmay35kvh1kyry3mb1sra4xx7wkkd-salmon-1.4.0.drv | ||
armhf-linux | /gnu/store/1lybj9zrlgri54r09cl4q8l20pgmpica-salmon-1.4.0.drv | ||
aarch64-linux | /gnu/store/vpgbqdrszqp76lxdw1azqkyxmr1va8js-salmon-1.4.0.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 9772 is way too long (92 characters) |