Differential gene expression analysis for multi-subject scRNA-seq
This package aggregateBioVar contains tools to summarize single cell gene expression profiles at the level of subject for single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates). A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/prcipxazsblssp8ygrq8ban1801584gi-r-aggregatebiovar-1.4.0.drv | ||
| i686-linux | /gnu/store/rkr8f9gn2dncqzp4i14j4jb9p83a053f-r-aggregatebiovar-1.4.0.drv |
| Linter | Message | Location |
|---|---|---|
| No lint warnings ✓ | ||