Ultrafast de novo assembly for long noisy reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/p3n6sbwa2cxddl5378gl4a0kffg4sixq-miniasm-0.3.drv | ||
| x86_64-linux | i586-pc-gnu | /gnu/store/f5zjvqbnpk3dpbp6jq63wsnrrz53l4jc-miniasm-0.3.drv | |
| x86_64-linux | arm-linux-gnueabihf | /gnu/store/nkc8c5jwacvirllbahbwcp2lkb605avl-miniasm-0.3.drv | |
| x86_64-linux | aarch64-linux-gnu | /gnu/store/pqc2sj0ixqyhwibn656l4lbp2xxqcsla-miniasm-0.3.drv | |
| mips64el-linux | /gnu/store/88blmqm5zak9q8m0sr4ngyc5vsmmr56d-miniasm-0.3.drv | ||
| i686-linux | /gnu/store/qsx5py5zqyy06jnv1pa2rjyd0521fr4m-miniasm-0.3.drv | ||
| i586-gnu | /gnu/store/1b1knp22689c25xgbgpdzvrfbf51vmdb-miniasm-0.3.drv | ||
| armhf-linux | /gnu/store/w9ml166gs80vb9dkqhjgr98c345jbwyp-miniasm-0.3.drv | ||
| aarch64-linux | /gnu/store/mi1c7x4nk11fgbsqkg061yjcdv2192nj-miniasm-0.3.drv |
| Linter | Message | Location |
|---|---|---|
| source-unstable-tarball Check for autogenerated tarballs | the source URI should not be an autogenerated tarball |