Extract sequences from FASTA and FASTQ files
Fxtract extracts sequences from a protein or nucleotide fastx (FASTA or FASTQ) file given a subsequence. It uses a simple substring search for basic tasks but can change to using POSIX regular expressions, PCRE, hash lookups or multi-pattern searching as required. By default fxtract looks in the sequence of each record but can also be told to look in the header, comment or quality sections.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/cl9j3lfp7bpf2fycj3jqlnqkly64dr8m-fxtract-2.3.drv | ||
| x86_64-linux | x86_64-w64-mingw32 | /gnu/store/8w7gnbaf1bbj5vkni3fv6452yx0dpfcw-fxtract-2.3.drv | |
| x86_64-linux | i686-w64-mingw32 | /gnu/store/ia83cvwcs4wszq53dfkn2yi2qa9s758p-fxtract-2.3.drv |
| Linter | Message | Location |
|---|---|---|
| No lint warnings ✓ | ||