Estimate gene expression levels from RNA-Seq data
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/x7ldf3rza2hn9zazkzlk20rq39plxh4i-rsem-1.3.3.drv | ||
riscv64-linux | /gnu/store/fvxiq632jikhzw8jyf69d5pcy69vb9ia-rsem-1.3.3.drv | ||
powerpc-linux | /gnu/store/50p6s1ib032dk4kivpkcpn8km0v5kh53-rsem-1.3.3.drv | ||
powerpc64le-linux | /gnu/store/23xqpgyzmf422alsngbr39kx0a7d2wz9-rsem-1.3.3.drv | ||
mips64el-linux | /gnu/store/jnc40ssq5169r7az2xy4gwlqzlxis1pr-rsem-1.3.3.drv | ||
i686-linux | /gnu/store/r8ylnsy3d2yk1mfikzcc9m458av32r6d-rsem-1.3.3.drv | ||
i586-gnu | /gnu/store/lpxnbffnzj3c6nwxq4fla9ibsli34hh0-rsem-1.3.3.drv | ||
armhf-linux | /gnu/store/k5g6aymjwd07ci83bbjdgqvw1lg1iyj8-rsem-1.3.3.drv | ||
aarch64-linux | /gnu/store/fxkx240cf372zw1ngcddi552k68n9k6v-rsem-1.3.3.drv |
Linter | Message | Location |
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wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used |