Language

Package: salmon @ 1.6.0

Synopsis

Quantification from RNA-seq reads using lightweight alignments

Description

Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.

Home page
https://github.com/COMBINE-lab/salmon
Location
gnu/packages/bioinformatics.scm (line: 9697, column: 2)
License

Derivations

SystemTargetDerivationBuild status
x86_64-linux/gnu/store/fcq3vhqpvr7jzhp8l0jpi4sr1yxr9qhc-salmon-1.6.0.drv
x86_64-linuxx86_64-w64-mingw32/gnu/store/zf8i3iq2sjiy0ss9n7xal2wdw1dsnck8-salmon-1.6.0.drv
x86_64-linuxriscv64-linux-gnu/gnu/store/cmw2jphkdbwm12vx9h2db44qiga9hylw-salmon-1.6.0.drv
x86_64-linuxpowerpc-linux-gnu/gnu/store/15c30pi0bjk62sgclhfblpxqzfpb14hc-salmon-1.6.0.drv
x86_64-linuxpowerpc64le-linux-gnu/gnu/store/pf08xn8prz5vg834clfqzwxpn7m78926-salmon-1.6.0.drv
x86_64-linuxmips64el-linux-gnu/gnu/store/17vlvcn1zw6bzhink57146lxlqqkn31g-salmon-1.6.0.drv
x86_64-linuxi686-w64-mingw32/gnu/store/g334rwl66k2rv45dbrrsgpg6ns79qkrx-salmon-1.6.0.drv
x86_64-linuxi586-pc-gnu/gnu/store/si7mdy5cb58ikv2l0fmg04xkc9mk513g-salmon-1.6.0.drv
x86_64-linuxarm-linux-gnueabihf/gnu/store/vaavgspbnmiy52n20i92yhchfci7bvsb-salmon-1.6.0.drv
x86_64-linuxaarch64-linux-gnu/gnu/store/2d6ih7krx0k325k6bqw78x29ig3w76nk-salmon-1.6.0.drv
riscv64-linux/gnu/store/iaq1wqpcsd1yl93q4a7bbc4n1bh0ikmy-salmon-1.6.0.drv
    powerpc-linux/gnu/store/g66bicx3473zkcqj60ndq9jfcmv7h1k8-salmon-1.6.0.drv
      powerpc64le-linux/gnu/store/7dl8dks2f6d6khckhp0vj69j53p17qdh-salmon-1.6.0.drv
      mips64el-linux/gnu/store/9i1w9zcnwcfj0j8mvb02f1imxrajybpl-salmon-1.6.0.drv
        i686-linux/gnu/store/gr8p4jdm6gl18cgrrpsrgpjc1yyn2qwm-salmon-1.6.0.drv
        i586-gnu/gnu/store/pphz06lil36p3qzxj0fs6yv7qzh4zzym-salmon-1.6.0.drv
        armhf-linux/gnu/store/snf0bz6bym9rgxd636b7gjycr0p92r3j-salmon-1.6.0.drv
        aarch64-linux/gnu/store/zpfdxslb214nh4wazbg9rg1i0gmghrdn-salmon-1.6.0.drv

        Lint warnings

        LinterMessageLocation
        input-labels

        Identify input labels that do not match package names

        label 'libstadenio-for-salmon' does not match package name 'libstadenio'
        formatting

        Look for formatting issues in the source

        line 9740 is way too long (92 characters)