Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/1cr1xxcjgmk1bgbdqrmi31rmcl805dya-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/z2gd7f1q2g60wsbkx0wg8biz22vx0kpn-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/hkhh5nbkjxqb3y407mmsl969q7byp7zw-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/dlss0hl09x397mmqg34kjd0k5ph1hzyq-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/s1r21ajjmhw8s41sx1ajms4ar62qfavv-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/zhjz42qc1kv4s1zhpqc74w15r2kqc1m7-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/c18c6a3dhwyr55k7x6ps8vfvydqng220-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/vvb01cxgzmh7xfigx5sb3c8g27y4hl92-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/xansk6s2jxndj99iz6vzgxwxcvjva2dk-salmon-0.13.1.drv |
Linter | Message | Location |
---|---|---|
formatting Look for formatting issues in the source | line 12235 is way too long (99 characters) |