Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/zr9mpyal9hz6r0bwj5x610wmpaz7p4gb-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/5cl1r4ggrlrpsf4yhr2p5l0xi8gqkywx-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/mvjvqhi8y9d55f1lkf5q1viarski692c-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/2l992b4c9pap6nmrqwbwczl0smkvf1yw-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/22zl0lq11xf7w9jr5cbpi0qs7vqnlz64-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/vzkz2ixbdb7alfjdarab1rzaxqwakrva-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/amr73cwridhhq2pfz1f4paxxdkg36s2g-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/1fz1a558dnivci6nzbrh9dcfc1ndsi43-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/sfa72in3zx276jl99h27iy64a84b33vi-salmon-0.13.1.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 11732 is way too long (99 characters) |