Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/p3pqdqxg36pk7l34mbxbvgrgaiyfk9ii-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/ig7g87ncmpk0jp8yx1g13hsh9pjp5xj2-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/jjdqf0s2xaz61bkij58a6phvj9rsgq0y-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/xky7pr3b642d4pik70mzmrpp8l3qvm1r-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/r3hlchv0jnrzmszjl08vlrilbp4854if-r-bseqsc-1.0-1.fef3f3e.drv |
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description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |