Quality control tool for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are:
Import of data from BAM, SAM or FastQ files (any variant);
Providing a quick overview to tell you in which areas there may be problems;
Summary graphs and tables to quickly assess your data;
Export of results to an HTML based permanent report;
Offline operation to allow automated generation of reports without running the interactive application.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/1ijm9fgw57h65pflvfjpsb1vpgxh62yx-fastqc-0.11.5.drv | ||
riscv64-linux | /gnu/store/i4cd6056smlncdph1zv4mw6gga40v8ys-fastqc-0.11.5.drv | ||
powerpc-linux | /gnu/store/c5xyrzlk3pv7i2a7j956wafhr99kbrkp-fastqc-0.11.5.drv | ||
powerpc64le-linux | /gnu/store/7vickfcaa646siz32cd7fx7ny7ssn0j5-fastqc-0.11.5.drv | ||
i686-linux | /gnu/store/b38p5frvxzg4hfb9n42nghvl5f48ygzi-fastqc-0.11.5.drv | ||
armhf-linux | /gnu/store/2j0507fbhir8fzxzpb6w6cfi5vj1cxj4-fastqc-0.11.5.drv | ||
aarch64-linux | /gnu/store/qyxyzxjlx7469y7r6m1xwccrs2qv9j2j-fastqc-0.11.5.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'java' does not match package name 'icedtea' | |
input-labels Identify input labels that do not match package names | label 'java-picard-1.113' does not match package name 'java-picard' |