Tools for genome analysis and arithmetic
Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' |