Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/8hc2cll6sjzps8zx12kn7bq3lhqcj47f-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/4l7pvz7qh4lq3als7gl2whz5mc4rn9fc-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/16596ygasvpms4pk4lbjla6rca8nqmwk-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/dpjpdh0x2rg9iwfm9vzyjsxbqz3gvcyw-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/jfqpj7gi2y8q3l53x3idam932qww78i6-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/8xmplm9xcx0gr5c8qjwwfk2vpq1y472p-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/nci991z06jlf49f4w4jc0rhjngsk58i7-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/wc00bf476p434f61cmvxdiwffndm1vhi-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/bm3mg906wxgkpkxgmdjlk995rbb44s05-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/3vby4hjsqhwds7i4zzc829c47h8f99wc-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |