Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/qxman366w0cp18m2z18rrlh0m0frw9rn-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/52p4y9wbscv7jkwxz242dr44pg8grry3-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/ayhdi30l9ihihlswr1q2qy7z6iyww53l-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/sajjnhjlwa0bv1id2nis5bhym0zbwf9f-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/9fpkkgsgx3pcyh70f482qb1jgs8vab82-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/n0cgnxka7c0myhyqmflhxjxvx9rsd13n-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/vjx0hnmc1qvfvc2afsnn8vxjmpmrvrr0-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/arhj7jkggas2iizbk8lc8s3ncl37ilwz-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/1qip68k70xj62bkd6f7p813lhxbsybq6-salmon-0.13.1.drv |
Linter | Message | Location |
---|---|---|
formatting Look for formatting issues in the source | line 11991 is way too long (99 characters) |