Mark duplicates in paired-end SAM files
Samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/wpnn9bpb3iqwdzmdnkvc2v6gyg9lnwg8-samblaster-0.1.24.drv | ||
mips64el-linux | /gnu/store/7q8x5gjsyr466vhd6m06hhcmv24ffy5n-samblaster-0.1.24.drv | ||
i686-linux | /gnu/store/vpi0qvzq7vcgn4fznsm3815k4wqxlgmv-samblaster-0.1.24.drv | ||
armhf-linux | /gnu/store/nap142wfcdi5fnyvyzfj6xvk6y9vnwbf-samblaster-0.1.24.drv | ||
aarch64-linux | /gnu/store/dkbzyvhx4bw7m4dgb6vp3ji7xcal5g5i-samblaster-0.1.24.drv |
Linter | Message | Location |
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description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 263 | |
derivation Report failure to compile a package to a derivation | failed to create i686-linux derivation: path ‘/gnu/store/imq41gd3q2767il9gq6mqh5cv44x09rf-guile-2.2.6.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: path ‘/gnu/store/9wn798a6w534mnn4f28lglbjmib9n392-zlib-1.2.11.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: path ‘/gnu/store/0afbxr7962z9ci6kw840n088qsmyz8lr-guile-2.2.6.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: path ‘/gnu/store/aiwgcl5dppar2s8l408bshywjybsy3nd-zlib-1.2.11.drv’ is not valid |