Quality control tool for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are:
Import of data from BAM, SAM or FastQ files (any variant);
Providing a quick overview to tell you in which areas there may be problems;
Summary graphs and tables to quickly assess your data;
Export of results to an HTML based permanent report;
Offline operation to allow automated generation of reports without running the interactive application.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/cj11ycsjy51yl5kl1f1vg9x4l076cs89-fastqc-0.11.5.drv | ||
riscv64-linux | /gnu/store/mnlb7xp9hznjnnrq21gj5w6sifq21nz4-fastqc-0.11.5.drv | ||
powerpc-linux | /gnu/store/zvabwm51r49kpbw0fmw3xa9iynfzg4k4-fastqc-0.11.5.drv | ||
powerpc64le-linux | /gnu/store/641kmmha12wr9xav0q5779advrzjznid-fastqc-0.11.5.drv | ||
i686-linux | /gnu/store/3kvkgix0nb3sn73w13pi3nfxrgr5fpsk-fastqc-0.11.5.drv | ||
armhf-linux | /gnu/store/2q4nxry3l3nqd338w44y4c5j3ssmmz4g-fastqc-0.11.5.drv | ||
aarch64-linux | /gnu/store/r90w726bf9y1zw4v2v3b23754bcb6gc8-fastqc-0.11.5.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'java' does not match package name 'icedtea' | |
input-labels Identify input labels that do not match package names | label 'java-picard-1.113' does not match package name 'java-picard' |