R Interface to CoreArray Genomic Data Structure (GDS) Files
This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt
package offers efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to read a GDS file in parallel with multiple R processes supported by the package parallel
.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/dkdfsiy77kkzmnkhxsczg0jmwd3vkl2n-r-gdsfmt-1.28.1.drv | ||
powerpc64le-linux | /gnu/store/s7dx7fq4brsg2n4dpvq1lpdy2q4hwz9h-r-gdsfmt-1.28.1.drv | ||
mips64el-linux | /gnu/store/gx7zsv522dnbd6xv1d77q3sn3n72jpj6-r-gdsfmt-1.28.1.drv | ||
i686-linux | /gnu/store/4kgs813vgcm6gr0m48j0xn7hndy4m7yg-r-gdsfmt-1.28.1.drv | ||
i586-gnu | /gnu/store/m4b2acsqhy7ylajn7jns1kbsk3d1v9h2-r-gdsfmt-1.28.1.drv | ||
armhf-linux | /gnu/store/hrhcpn77d06iqa39sdx36six61fk5q35-r-gdsfmt-1.28.1.drv | ||
aarch64-linux | /gnu/store/wazdayvinfisqlv3lbv3ski8rbr1l6n2-r-gdsfmt-1.28.1.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | tabulation on line 10551, column 17 |