Pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include:
mapping PacBio or Oxford Nanopore genomic reads to the human genome;
finding overlaps between long reads with error rate up to ~15%;
splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome;
aligning Illumina single- or paired-end reads;
assembly-to-assembly alignment;
full-genome alignment between two closely related species with divergence below ~15%.
| Linter | Message | Location |
|---|---|---|
| formatting Look for formatting issues in the source | line 11588 is way too long (113 characters) |