Analyze, model, and explore 3C-based data
TADbit is a complete Python library to deal with all steps to analyze, model, and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/xdgbjqmaqdcwssy0irq3r2wxgs9jm1lh-tadbit-1.0.1.drv | ||
powerpc64le-linux | /gnu/store/5p9vb87jz266m2kn0lcaqpdmrmd2k1x8-tadbit-1.0.1.drv | ||
mips64el-linux | /gnu/store/sljjragfag6daywmifcsx8f2a193icfs-tadbit-1.0.1.drv | ||
i686-linux | /gnu/store/94kx77w5as9srpamr8c5msw6ifkj3lny-tadbit-1.0.1.drv | ||
i586-gnu | /gnu/store/yvp58pkvlwhkqz4d63bwi9h7bjvby6ba-tadbit-1.0.1.drv | ||
armhf-linux | /gnu/store/dflb3f28989kxnxxcsl3pwhbfh7zxq5f-tadbit-1.0.1.drv | ||
aarch64-linux | /gnu/store/n08d65ijbjkpxp55f7fpn6z91i71w3z9-tadbit-1.0.1.drv |
Linter | Message | Location |
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optional-tests Make sure tests are only run when requested | the 'check' phase should respect #:tests? |