Quality control tool for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are:
Import of data from BAM, SAM or FastQ files (any variant);
Providing a quick overview to tell you in which areas there may be problems;
Summary graphs and tables to quickly assess your data;
Export of results to an HTML based permanent report;
Offline operation to allow automated generation of reports without running the interactive application.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/an84zar42phssdpcgmr248m9kcy4rd12-fastqc-0.11.5.drv | ||
| i686-linux | /gnu/store/x3ii0nwq25d2m5hdsnb946zmzp0sy8gp-fastqc-0.11.5.drv |
| Linter | Message | Location |
|---|---|---|
| derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: (match-error "match" "no matching pattern" "mips64el-linux") |