Aligner and other tools for short sequencing reads
This package provides bioinformatic tools to align, deduplicate, reformat, filter and normalize DNA and RNA-seq data. It includes the following tools: BBMap, a short read aligner for DNA and RNA-seq data; BBNorm, a kmer-based error-correction and normalization tool; Dedupe, a tool to simplify assemblies by removing duplicate or contained subsequences that share a target percent identity; Reformat, to convert reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s; and BBDuk, a tool to filter, trim, or mask reads with kmer matches to an artifact/contaminant file.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/3s5ds05jwylyl4pwzhpz5m2m1kfprynh-bbmap-35.82.drv |
Linter | Message | Location |
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derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: (match-error "match" "no matching pattern" "mips64el-linux") |