Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/qh6b8l8w3jhfn9jvg1l6vqrzjrx3r8zd-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/5nc3v8n89lx9hi0yp4fm6xpfi301s1gz-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/14yrazgqmmcsdfylgk2fy40p2f7bn073-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/rplyibj85aldkqwm1a7xl5a3iwjlag3s-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/hhjzvqmpdklh6si6r7srayi7b9ipzvjn-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/vrh5bprs1ijf2nva0mn1cisq93l27b9a-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/ah9048piini38pnkif7z9swr4w4l730p-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/rz1q2w5ayyng8vdiibzffdp1b45rbbck-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/mxp5d6hf96nhjl0nn5nr5ld6bx2r35nk-salmon-0.13.1.drv |
Linter | Message | Location |
---|---|---|
formatting Look for formatting issues in the source | line 11792 is way too long (99 characters) |