High speed stand-alone pan genome pipeline
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by the Prokka program) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. Roary is not intended for metagenomics or for comparing extremely diverse sets of genomes.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/vxgbqqy72z4717f3hgmiqk5kv6ycmfz1-roary-3.12.0.drv | ||
powerpc64le-linux | /gnu/store/h3mccynpn0jkw2c60dc3c466a4xncis6-roary-3.12.0.drv | ||
mips64el-linux | /gnu/store/a9di3yncdr31j6wxzc5d7p7f69y92j7p-roary-3.12.0.drv | ||
i686-linux | /gnu/store/zlr9n25cgvxgny046pzy6s4cxyicp6n1-roary-3.12.0.drv | ||
i586-gnu | /gnu/store/y4igg8qaljp2yn3igmga82s1p7xbzxc9-roary-3.12.0.drv | ||
armhf-linux | /gnu/store/cpfhbrzc3kvippz8yl4k29fxpwr1irii-roary-3.12.0.drv | ||
aarch64-linux | /gnu/store/53im3dx34xppznrw5h6kxfs1q7611a1h-roary-3.12.0.drv |
Linter | Message | Location |
---|---|---|
wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used | |
optional-tests Make sure tests are only run when requested | the 'check' phase should respect #:tests? |