Quality control tool for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are:
Import of data from BAM, SAM or FastQ files (any variant);
Providing a quick overview to tell you in which areas there may be problems;
Summary graphs and tables to quickly assess your data;
Export of results to an HTML based permanent report;
Offline operation to allow automated generation of reports without running the interactive application.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/cxgmkcin5wh8gf5j36b369y62yy7pndc-fastqc-0.11.5.drv | ||
| riscv64-linux | /gnu/store/9lp92wnac28xgn14bsaiy6ps614j6v50-fastqc-0.11.5.drv | ||
| powerpc-linux | /gnu/store/5r99f4jfqgc8m3znfzdkp06xxk4iaa5s-fastqc-0.11.5.drv | ||
| powerpc64le-linux | /gnu/store/j7kwaw5m8ml9jfkdvs6piz53b5hbkwr9-fastqc-0.11.5.drv | ||
| i686-linux | /gnu/store/ba9lkaac50xkyxgkrgp48vkjka7sha1z-fastqc-0.11.5.drv | ||
| armhf-linux | /gnu/store/fjvdy6vasqc8s8ywdbda7x6zis2zrkc7-fastqc-0.11.5.drv | ||
| aarch64-linux | /gnu/store/jas0x5pvshvqwvhfamgjwf6zxmgj9k04-fastqc-0.11.5.drv |
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'java' does not match package name 'icedtea' | |
| input-labels Identify input labels that do not match package names | label 'java-picard-1.113' does not match package name 'java-picard' |