Analysis pipeline for single-cell RNA sequencing experiments
PiGX scRNAseq is an analysis pipeline for preprocessing and quality control for single cell RNA sequencing experiments. The inputs are read files from the sequencing experiment, and a configuration file which describes the experiment. It produces processed files for downstream analysis and interactive quality reports. The pipeline is designed to work with UMI based methods.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/sd0ifxsyxq6v9i5y7cwx7li9ihsz3716-pigx-scrnaseq-0.0.8.drv |
| Linter | Message | Location |
|---|---|---|
| derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: (match-error "match" "no matching pattern" "armhf-linux") | |
| derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: (match-error "match" "no matching pattern" "aarch64-linux") | |
| derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: (match-error "match" "no matching pattern" "mips64el-linux") | |
| formatting Look for formatting issues in the source | tabulation on line 12769, column 0 | |
| formatting Look for formatting issues in the source | tabulation on line 12770, column 0 | |
| formatting Look for formatting issues in the source | tabulation on line 12771, column 0 |