Pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include:
mapping PacBio or Oxford Nanopore genomic reads to the human genome;
finding overlaps between long reads with error rate up to ~15%;
splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome;
aligning Illumina single- or paired-end reads;
assembly-to-assembly alignment;
full-genome alignment between two closely related species with divergence below ~15%.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/sxkva0zgcfmmvribq1kjz04abslnyz8a-minimap2-2.18.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/b2rn9l454vsklfichki5fclcmq0m4n9h-minimap2-2.18.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/q198yjsd8br4m82wkj8bbw9w4q268ak5-minimap2-2.18.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/bsq95m7bpq801020m6ncf7dgmwf34pla-minimap2-2.18.drv | |
powerpc64le-linux | /gnu/store/sgxflgqzl8jqbhd9ymk6gg2i43qifiss-minimap2-2.18.drv | ||
mips64el-linux | /gnu/store/ik35zcvmnqdvmm75f7xvy63g7jf6vrjr-minimap2-2.18.drv | ||
i686-linux | /gnu/store/b80xyr7n907rvzkn9xzgvfznablgmac5-minimap2-2.18.drv | ||
i586-gnu | /gnu/store/743g3hqxq94h3qk57naj73nf7y900whs-minimap2-2.18.drv | ||
armhf-linux | /gnu/store/3kg7k34bak83lfaisfb5qqx3vnyw5qxf-minimap2-2.18.drv | ||
aarch64-linux | /gnu/store/j895clk8dmy3ij3cgy9cgkn7waxsrsi6-minimap2-2.18.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 11003 is way too long (113 characters) |