Estimate gene expression levels from RNA-Seq data
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/agirdjlmmsbs91vnzdyjzyfvisvrblcg-rsem-1.3.1.drv | ||
powerpc64le-linux | /gnu/store/k9n3259aql6xbl4v3grzwrxpq0wm31a0-rsem-1.3.1.drv | ||
mips64el-linux | /gnu/store/d0n7lfxcmmk661yy02szcr25f2r7hgw5-rsem-1.3.1.drv | ||
i686-linux | /gnu/store/xd8nxfmkgjss18cxwccw68vzc53i51z6-rsem-1.3.1.drv | ||
i586-gnu | /gnu/store/jvmgfdy7mvmjlvjkq54399hxrkgfp5z1-rsem-1.3.1.drv | ||
armhf-linux | /gnu/store/wj37h31jmbii45ac3dnknbfp3wnv9zlb-rsem-1.3.1.drv | ||
aarch64-linux | /gnu/store/zinpcmy0zykv7dq7azp5z87mav7ddcv6-rsem-1.3.1.drv |
Linter | Message | Location |
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wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used |