Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/ji44znlxh5rajr080dpy84b9np340ky1-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/n43iss4gjk6psip60h9asnfaqyiij7a1-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/nr9y1lp5q5xxb0lqnnslca7cp1wy418m-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/x59jiwv1pfgsznyhisx46sf0mai4k58j-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/hyw1nrvk2j0lm7g9079ia80xf8zjnlzw-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
---|---|---|
description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |