Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/bwv6f2ss43ahs2ixz8d1vgssd9yi2rqm-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/6nggw7vrjg19vx2xljjvsx8r2s0dw521-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/iafvbfqb0ah8dg00zh6gnn2x41vf1lm5-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/hfippyk3jhx0iya7byf1r0191apki5ny-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/16zmpir3mmd55ka21yp3cjbnbh4aainr-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
---|---|---|
description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |