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Package: jellyfish @ 2.3.0

Synopsis

Tool for fast counting of k-mers in DNA

Description

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in a binary format, which can be translated into a human-readable text format using the jellyfish dump command, or queried for specific k-mers with jellyfish query.

Home page
http://www.genome.umd.edu/jellyfish.html
Location
gnu/packages/bioinformatics.scm (line: 4734, column: 2)
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