Estimate gene expression levels from RNA-Seq data
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/zf2cv6vjgsj0y32bvsd160d9hr68w2jd-rsem-1.3.1.drv | ||
powerpc64le-linux | /gnu/store/4c5q208z951mw3iy8y5bipgigzv8m1sb-rsem-1.3.1.drv | ||
mips64el-linux | /gnu/store/iva6qm4g5c1z809iibqfddvl20piz5da-rsem-1.3.1.drv | ||
i686-linux | /gnu/store/a8548z9ysqk4h59vw6v846j4wfva83n1-rsem-1.3.1.drv | ||
i586-gnu | /gnu/store/fg2gjh6pf766ijyir522i1j1l5xjc4kb-rsem-1.3.1.drv | ||
armhf-linux | /gnu/store/g2yqkjfhv751w6a6ql1yiq5zyhbs9pb8-rsem-1.3.1.drv | ||
aarch64-linux | /gnu/store/7bflqxihpjmcyifq6gy3prqg7g62m27d-rsem-1.3.1.drv |
Linter | Message | Location |
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wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used |