Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/7hv1slvfc5734yxxgn5sd2c4w2hdhz2s-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/v9yw0chv2zmsf51ylckbw9r66gwc1852-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/i530cjwvbw14jpzki9q6aysw0pp7zbvk-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/cpfhz8dk0w8zr5ya5z294illw3dn4gfz-salmon-0.13.1.drv | |
powerpc64le-linux | /gnu/store/1y8prxl9hh1ywn4gac2r7sag8hirvaz8-salmon-0.13.1.drv | ||
mips64el-linux | /gnu/store/j22dk95flr87k5rbx63449xix8b77rbw-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/mskp2xmh1kx607i0c4af32jmzvlhh802-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/iqjizak4rvx2p91cyy56n2i2vgdyi6li-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/zmhshhpaybazl5f9ky9yp3zbkrj3bjy2-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/bwq7n2wj78h6r7y84fwnfkdk96m0bv4r-salmon-0.13.1.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 11147 is way too long (99 characters) |