Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/zi24ha3hmhchyy3bivj70y0kvfr36h16-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/4md9z17yi1lk21lpc8kfivrii2qvqyjq-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/yxrnac5vr4pavh4s2shzh71zrxwa2s7x-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/963znq6jly0qg3qvd3n8gh0ihpinv5ir-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/83g7hhn3ynx3n64pm03azr35lx5iiswy-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
---|---|---|
description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 | |
derivation Report failure to compile a package to a derivation | failed to create x86_64-linux derivation: path ‘/gnu/store/0i439yy14ckkynhj1wl2gs06agdbp0af-r-rcolorbrewer-1.1-2.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create i686-linux derivation: path ‘/gnu/store/imq41gd3q2767il9gq6mqh5cv44x09rf-guile-2.2.6.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: path ‘/gnu/store/9wn798a6w534mnn4f28lglbjmib9n392-zlib-1.2.11.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: path ‘/gnu/store/0afbxr7962z9ci6kw840n088qsmyz8lr-guile-2.2.6.drv’ is not valid | |
derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: path ‘/gnu/store/aiwgcl5dppar2s8l408bshywjybsy3nd-zlib-1.2.11.drv’ is not valid |