Aligner and other tools for short sequencing reads
This package provides bioinformatic tools to align, deduplicate, reformat, filter and normalize DNA and RNA-seq data. It includes the following tools: BBMap, a short read aligner for DNA and RNA-seq data; BBNorm, a kmer-based error-correction and normalization tool; Dedupe, a tool to simplify assemblies by removing duplicate or contained subsequences that share a target percent identity; Reformat, to convert reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s; and BBDuk, a tool to filter, trim, or mask reads with kmer matches to an artifact/contaminant file.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/sgljxycw5yjq7zfzq5j9lm249m1nmpd1-bbmap-39.01.drv | ||
| riscv64-linux | /gnu/store/a4pg63rlqijxbn6hb94z4cfxmfcj5d73-bbmap-39.01.drv | ||
| powerpc64le-linux | /gnu/store/g0ikkqscz3hj46ca2mikp18q19yjm84p-bbmap-39.01.drv | ||
| aarch64-linux | /gnu/store/x9901pyzqsc8mxf5426wwq77mqqylyqj-bbmap-39.01.drv |
| Linter | Message | Location |
|---|---|---|
| No lint warnings ✓ | ||