Revision a488039848690c635639231027056f8d5f6068d1

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Package: gffcompare @ 0.10.15-1.be56ef4

Synopsis

Tool for comparing or classifing transcripts of RNA-Seq

Description

gffcompare is a tool that can:

  1. compare and evaluate the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie);

  2. collapse (merge) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples);

  3. classify transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).

Home page
https://github.com/gpertea/gffcompare/
Location
gnu/packages/bioinformatics.scm (line: 19321, column: 4)
Licenses

Derivations

SystemTargetDerivationBuild status
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