Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/489xkd4ck0s0wslcxv0028p9h5dvyzjn-r-bseqsc-1.0-1.fef3f3e.drv | ||
| i686-linux | /gnu/store/d5ry6kgb2lswn89wcqx6i9h1zyx3japl-r-bseqsc-1.0-1.fef3f3e.drv |
| Linter | Message | Location |
|---|---|---|
| No lint warnings ✓ | ||