Revision a488039848690c635639231027056f8d5f6068d1

Package: scregseg @ 0.1.3

Synopsis

Single-cell regulatory landscape segmentation

Description

Scregseg (Single-Cell REGulatory landscape SEGmentation) is a tool that facilitates the analysis of single cell ATAC-seq data by an HMM-based segmentation algorithm. Scregseg uses an HMM with Dirichlet-Multinomial emission probabilities to segment the genome either according to distinct relative cross-cell accessibility profiles or (after collapsing the single-cell tracks to pseudo-bulk tracks) to capture distinct cross-cluster accessibility profiles.

Home page

https://github.com/BIMSBbioinfo/scregseg

Location

gnu/packages/bioinformatics.scm (line: 23601, column: 2)

License

• GPL 3+

Derivations

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