Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/zy9j6xm9493n4irx1jq91jbr5rl1ydaq-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/bmglx6kiz870w9bqnfdp67qg26dbdlka-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/6zapr1bkaxzz5hmjyhxm6y9d2xv713vc-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/xgfyws0dxx9vww8fh15wrpzxm86kri77-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/z0w2hip41i0bmpg1yqpzgl2nairi7gvk-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/rrcvm0xghjnqdn1rnm6wpv1pkwakqx55-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/7337382s5kh3qhn1bzm04wj40glqcacv-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/pb9w4097kry7fzz1gwvfw2w6yhbhn7if-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/08hjw0mg7y6sdmgi595kkm9d6nhf6m79-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/qrj6730q1ggc28r4qjj9if3y628rk885-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |